
Decoding Humanity: A Software Engineer's Guide to the Stories in Our Genes
11 minGolden Hook & Introduction
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Nova: Imagine you're a software engineer tasked with understanding the most complex codebase ever written. It's three billion letters long, has been iterating for four billion years, and contains the entire history of a species. That's not a new programming language—that's your own DNA. And for centuries, we’ve been trying to understand our history using fragmented, unreliable records—it's like trying to debug a program with no source code. But what if we could finally access that code?
hl01 yang: It would change everything. You’d go from guesswork and interpretation to having a verifiable source of truth. It’s the dream, really.
Nova: It is the dream! And it’s a dream that’s becoming reality. That's exactly what we're exploring today, using Adam Rutherford's incredible book, 'A Brief History of Everyone Who Ever Lived.' And I'm so thrilled because with us is hl01 yang, a software engineer whose mind is perfectly tuned for this. Welcome, hl01!
hl01 yang: Thanks for having me, Nova. It's a fascinating topic. The parallels between genomics and large-scale software systems are just undeniable.
Nova: I’m so glad you see it too! Because that’s our plan. Today we'll dive deep into this from two powerful perspectives. First, we'll explore how genetics is acting as the ultimate debugging tool for history. Then, we'll discuss how it helps us 'refactor' the flawed social algorithm of race.
Deep Dive into Core Topic 1: Genetics as the Ultimate Debugging Tool for History
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Nova: So, hl01, let's start with that idea of history as a buggy program. We have stories, legends, but so much is lost or biased. The book gives this perfect example that I think just brilliantly illustrates the point: the 500-year-old cold case of King Richard III.
hl01 yang: Right, the king under the car park.
Nova: Exactly! The king under the car park. So, for our listeners, here’s the setup. King Richard III dies in a brutal battle in 1485. He's the last English king to die in combat. The victors, the Tudors, bury him quickly and without ceremony in a church in Leicester. Then, over the centuries, the church is destroyed, the location is forgotten, and history is rewritten by his enemies, painting him as this monstrous, deformed villain. His story becomes this messy, unreliable historical file.
hl01 yang: Full of conflicting documentation and biased commit messages, so to speak.
Nova: Perfect analogy! So, fast forward 500 years to 2012. A team of archaeologists has a hunch. Based on old maps, they think the long-lost church might be under a city council car park. It sounds crazy, but they get permission to dig. And under the spot marked with a painted 'R' for 'Reserved'... they find a skeleton.
hl01 yang: The chances of that must be astronomical.
Nova: You'd think! But here's where the debugging begins. The skeleton shows evidence of a violent death, with multiple head wounds consistent with a battle. And, incredibly, the spine is severely curved. The skeleton has scoliosis, matching the Tudors' description of Richard as a "hunchback."
hl01 yang: Okay, so that's a significant data point. In software, that's like a log file entry that points to a specific error. It's strong circumstantial evidence, but it's not definitive proof. Someone else could have had scoliosis and died violently.
Nova: Exactly! It’s not proof. So how do you prove it? This is where the genius of genetics comes in. The researchers did something amazing. They found a living descendant of Richard III's sister, Anne of York. A man named Michael Ibsen, a Canadian furniture maker.
hl01 yang: And they used him as a reference key?
Nova: Precisely. They focused on something called mitochondrial DNA, or mtDNA. It's a special piece of our genetic code that we only inherit from our mothers. So it's passed down the maternal line, from mother to child, almost unchanged for generations. It’s a perfect, unbroken chain.
hl01 yang: So they could trace it directly from Richard's sister, down through all the women in her family tree, right to this man, Michael Ibsen.
Nova: You got it. Then, the moment of truth. They carefully drilled into a tooth from the skeleton they found in the car park—teeth are great at preserving DNA—and extracted its mitochondrial DNA. They sequenced it. And hl01, it was a perfect match to Michael Ibsen's.
hl01 yang: Wow. That's the confirmation. That's the checksum that validates the entire file. The scoliosis was a weak hash—suggestive, but not definitive. The mtDNA, because it's passed down so cleanly, is like a perfect cryptographic signature. It's an incredibly elegant way to confirm the 'data integrity' of that skeleton.
Nova: A cryptographic signature for a king! I love that. So it's not just a story, it's a rigorous data validation process.
hl01 yang: Exactly. It transforms history from pure interpretation into something testable. It means you can, in a way, run a 'unit test' on a historical claim. And in this case, the test passed. The buggy, 500-year-old file was officially debugged.
Nova: It’s just mind-blowing. It shows how this new science is giving us a power we've never had before—the power to reach back in time and find concrete answers.
Deep Dive into Core Topic 2: Refactoring Race: Deconstructing a Flawed Social Algorithm
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Nova: Running a unit test on history... that's such a powerful idea. And it leads us so naturally to our second point, because genetics isn't just testing old stories, it's forcing us to completely refactor some of our most deeply embedded social 'algorithms.' I'm talking about the concept of race.
hl01 yang: This is where the book gets really profound, I think. It moves from 'what happened' to 'who are we.'
Nova: It really does. And it does it with cold, hard data. The author, Rutherford, walks us through this foundational discovery made back in 1972 by a geneticist named Richard Lewontin. And Lewontin's finding essentially turned our common-sense understanding of race on its head.
hl01 yang: He quantified the variation, right?
Nova: He did. He looked at the genetic differences in blood groups between people all over the world. And what he found was stunning. He discovered that about 85% of all human genetic variation exists any single population. For example, if you take just the population of Italy, you'll find 85% of all the genetic diversity present in our entire species.
hl01 yang: So the remaining 15% is the variation different populations?
Nova: Even less than that! Only about 8% of the variation accounts for the differences between, say, someone from Sweden and someone from Nigeria. So our eyes see these obvious physical differences—skin color, eye shape, hair texture—and our brains tell us these must be huge, fundamental distinctions. But the genetics tells a completely different story. How does a software engineer make sense of that?
hl01 yang: It's a classic UI vs. backend problem. It’s one of the first things you learn. What we see—the visible traits—that's the User Interface. It's the most noticeable part, but it's a tiny, tiny fraction of the total code.
Nova: The UI! That's brilliant.
hl01 yang: The 'backend'—the vast majority of our genetic code that runs our organs, our metabolism, our immune systems—is where the real complexity and variation lie. Lewontin's data shows that two people with the same 'UI skin' can have more differences in their 'backend code' than two people with completely different skins.
Nova: So 'race' is just a skin? A theme we apply to an application?
hl01 yang: It’s worse than that, really. It's like a legacy feature that was poorly designed in the first place, based only on the most superficial UI elements, and it causes countless bugs and crashes in the social 'operating system.' The data clearly shows it's not a meaningful way to categorize the underlying system.
Nova: And what do you do with a feature like that in the software world?
hl01 yang: You deprecate it. You mark it as obsolete and you refactor the system based on what's actually true. You rewrite the code to be more efficient and logical. Genetics gives us the data to do that refactoring for our social understanding. It shows us the architecture is far more interconnected and less siloed than our social categories would have us believe.
Nova: That feels so important. It's not just an academic point; it connects directly to ideas of justice and equality. It's using science to dismantle a tool of prejudice.
hl01 yang: It is. It’s providing the objective evidence that the system we’ve built is based on a flawed premise. And as an engineer, when you find a fundamental flaw in your premise, you don't just keep patching it. You go back and fix the foundation.
Synthesis & Takeaways
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Nova: That is the perfect way to put it. So, as we wrap up, we've seen genetics as this incredible new tool—a debugger for history, like with Richard III, and a refactoring tool for society, as with the concept of race. It’s like we’ve been given a new language to read the human story.
hl01 yang: A new and much more precise language. It's like moving from an old, interpreted language with lots of ambiguity to a modern, compiled language where things are clearly defined and verifiable.
Nova: I love that. It really feels like we're at the beginning of a new era of understanding ourselves. We’ve covered so much ground, from kings in car parks to the very code of our identity. What’s the one big idea you're taking away from this, hl01?
hl01 yang: For me, it’s the realization that we've built so much of our world on assumptions that are like 'legacy code'—ideas that seemed to make sense at the time but are now outdated and inefficient. Now that we have better data, from genetics and other fields, the real challenge isn't just understanding it. It's having the courage to act on it.
Nova: The courage to actually hit 'refactor.'
hl01 yang: Exactly. So the question I'm left with, and maybe for our listeners to think about too, is this: what other fundamental assumption about our world is just waiting for its 'genetic test'? What other part of our social code is ready to be rewritten?
Nova: A powerful question to end on. hl01 yang, thank you so much for bringing your incredible perspective to this. It’s been an absolute pleasure.
hl01 yang: The pleasure was all mine, Nova. Thank you.